Variant report

Variant	rs28626442
Chromosome Location	chr4:171698182-171698183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10005720	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10016425	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10026794	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10031519	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1522564	0.84[EUR][1000 genomes]
rs17056072	0.84[EUR][1000 genomes]
rs17056080	0.84[EUR][1000 genomes]
rs17056139	0.84[EUR][1000 genomes]
rs28688612	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821464	0.84[EUR][1000 genomes]
rs7677809	0.84[EUR][1000 genomes]
rs9996374	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881606	chr4:171640683-171760509	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv3508498	chr4:171690271-171722702	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3508499	chr4:171690271-171722702	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171697600-171698400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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