Variant report
| Variant | rs17056139 |
|---|---|
| Chromosome Location | chr4:171661834-171661835 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10022346 | 1.00[CEU][hapmap] |
| rs10031519 | 0.84[EUR][1000 genomes] |
| rs11938848 | 0.82[AMR][1000 genomes] |
| rs1522564 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17056072 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17056080 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17662983 | 0.84[AMR][1000 genomes] |
| rs17730512 | 1.00[CEU][hapmap];0.88[MEX][hapmap];0.93[AMR][1000 genomes] |
| rs2049244 | 0.91[AMR][1000 genomes] |
| rs28626442 | 0.84[EUR][1000 genomes] |
| rs28688612 | 0.84[EUR][1000 genomes] |
| rs401334 | 1.00[JPT][hapmap] |
| rs435684 | 1.00[JPT][hapmap] |
| rs6821464 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6827378 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6857692 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73868355 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7672136 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7677809 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7679375 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes] |
| rs9996374 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596167 | chr4:171576294-171672038 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv881141 | chr4:171620514-171680223 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv881235 | chr4:171627133-171691630 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv880422 | chr4:171637914-171691630 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 5 | nsv881606 | chr4:171640683-171760509 | Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv461835 | chr4:171642051-171688868 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 7 | nsv596168 | chr4:171642051-171688868 | Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171659200-171663000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr4:171661600-171662000 | Enhancers | HMEC | breast |
