Variant report

Variant	rs17730512
Chromosome Location	chr4:171666694-171666695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr4:171666470-171667038	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000250968	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10002974	0.82[ASN][1000 genomes]
rs10004688	0.81[ASN][1000 genomes]
rs10007655	0.81[ASN][1000 genomes]
rs10022346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10029596	0.90[ASN][1000 genomes]
rs10520190	0.90[ASN][1000 genomes]
rs11936516	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1522564	0.93[AMR][1000 genomes]
rs1522565	0.90[ASN][1000 genomes]
rs1533836	0.82[ASN][1000 genomes]
rs17056072	0.91[AMR][1000 genomes]
rs17056080	0.91[AMR][1000 genomes]
rs17056139	0.93[AMR][1000 genomes]
rs17662983	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17730418	0.90[ASN][1000 genomes]
rs17730478	0.90[ASN][1000 genomes]
rs17730495	0.89[ASN][1000 genomes]
rs2030538	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2049244	0.84[AMR][1000 genomes]
rs28455548	0.95[ASN][1000 genomes]
rs28485207	0.89[ASN][1000 genomes]
rs28501416	0.91[ASN][1000 genomes]
rs28544121	0.90[ASN][1000 genomes]
rs28633869	0.90[ASN][1000 genomes]
rs28640585	0.89[ASN][1000 genomes]
rs6821464	0.89[AMR][1000 genomes]
rs6827378	0.91[AMR][1000 genomes]
rs6857692	0.91[AMR][1000 genomes]
rs72981855	0.81[ASN][1000 genomes]
rs73868355	0.91[AMR][1000 genomes]
rs7672136	0.91[AMR][1000 genomes]
rs7677809	0.93[AMR][1000 genomes]
rs7679375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697640	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9991446	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881141	chr4:171620514-171680223	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv881235	chr4:171627133-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv880422	chr4:171637914-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv881606	chr4:171640683-171760509	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv461835	chr4:171642051-171688868	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	nsv596168	chr4:171642051-171688868	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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