Variant report
| Variant | rs2030538 |
|---|---|
| Chromosome Location | chr4:171664775-171664776 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10002974 | 0.81[ASN][1000 genomes] |
| rs10004688 | 0.81[ASN][1000 genomes] |
| rs10007655 | 0.81[ASN][1000 genomes] |
| rs10022346 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10029596 | 0.89[ASN][1000 genomes] |
| rs10520190 | 0.89[ASN][1000 genomes] |
| rs11936516 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1522565 | 0.89[ASN][1000 genomes] |
| rs1533835 | 0.84[ASN][1000 genomes] |
| rs1533836 | 0.81[ASN][1000 genomes] |
| rs1533838 | 0.84[ASN][1000 genomes] |
| rs17056064 | 0.84[ASN][1000 genomes] |
| rs17662856 | 0.84[ASN][1000 genomes] |
| rs17662983 | 0.85[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17730418 | 0.89[ASN][1000 genomes] |
| rs17730478 | 0.89[ASN][1000 genomes] |
| rs17730495 | 0.88[ASN][1000 genomes] |
| rs17730512 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28455548 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28485207 | 0.88[ASN][1000 genomes] |
| rs28501416 | 0.90[ASN][1000 genomes] |
| rs28544121 | 0.89[ASN][1000 genomes] |
| rs28633869 | 0.89[ASN][1000 genomes] |
| rs28640585 | 0.88[ASN][1000 genomes] |
| rs72981855 | 0.85[ASN][1000 genomes] |
| rs7679375 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7697640 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9991446 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596167 | chr4:171576294-171672038 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv881141 | chr4:171620514-171680223 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv881235 | chr4:171627133-171691630 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv880422 | chr4:171637914-171691630 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 5 | nsv881606 | chr4:171640683-171760509 | Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv461835 | chr4:171642051-171688868 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 7 | nsv596168 | chr4:171642051-171688868 | Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171664600-171665000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
