Variant report

Variant	rs28544121
Chromosome Location	chr4:171659400-171659401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10002974	0.92[ASN][1000 genomes]
rs10004688	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10007655	0.91[ASN][1000 genomes]
rs10022346	0.87[ASN][1000 genomes]
rs10029596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105540	0.81[ASN][1000 genomes]
rs11935380	0.81[ASN][1000 genomes]
rs11936516	0.89[ASN][1000 genomes]
rs1522565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533835	0.90[ASN][1000 genomes]
rs1533836	0.92[ASN][1000 genomes]
rs1533838	0.90[ASN][1000 genomes]
rs17056064	0.90[ASN][1000 genomes]
rs17662856	0.90[ASN][1000 genomes]
rs17662983	0.92[ASN][1000 genomes]
rs17730210	0.81[ASN][1000 genomes]
rs17730418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17730512	0.90[ASN][1000 genomes]
rs1816810	0.91[EUR][1000 genomes]
rs2030538	0.89[ASN][1000 genomes]
rs28455548	0.89[ASN][1000 genomes]
rs28485207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28501416	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28633869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34445115	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58286773	0.91[EUR][1000 genomes]
rs72981855	0.91[ASN][1000 genomes]
rs7679375	0.89[ASN][1000 genomes]
rs7697640	0.89[ASN][1000 genomes]
rs9991446	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881141	chr4:171620514-171680223	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv881235	chr4:171627133-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv880422	chr4:171637914-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv881606	chr4:171640683-171760509	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv461835	chr4:171642051-171688868	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	nsv596168	chr4:171642051-171688868	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171658600-171661600	Weak transcription	HMEC	breast
2	chr4:171659200-171663000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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