Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10004688	0.82[EUR][1000 genomes]
rs10012640	0.98[ASN][1000 genomes]
rs10029596	0.91[EUR][1000 genomes]
rs10520190	0.91[EUR][1000 genomes]
rs12331308	0.93[ASN][1000 genomes]
rs1522565	0.91[EUR][1000 genomes]
rs1522571	0.93[ASN][1000 genomes]
rs17730163	0.98[ASN][1000 genomes]
rs17730418	0.91[EUR][1000 genomes]
rs17730478	0.91[EUR][1000 genomes]
rs17730495	0.91[EUR][1000 genomes]
rs1816810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485207	0.91[EUR][1000 genomes]
rs28501416	0.91[EUR][1000 genomes]
rs28544121	0.91[EUR][1000 genomes]
rs28633869	0.91[EUR][1000 genomes]
rs28640585	0.91[EUR][1000 genomes]
rs28804991	0.94[ASN][1000 genomes]
rs34445115	0.91[EUR][1000 genomes]
rs4692848	0.89[ASN][1000 genomes]
rs4692849	0.99[ASN][1000 genomes]
rs55684987	0.89[ASN][1000 genomes]
rs56120627	0.97[ASN][1000 genomes]
rs58653762	0.99[ASN][1000 genomes]
rs6857326	0.90[ASN][1000 genomes]
rs7665640	0.97[ASN][1000 genomes]
rs7685183	0.97[ASN][1000 genomes]
rs9991446	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171600400-171604000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:171601800-171603600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:171602200-171603000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:171602400-171603400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:171602600-171605400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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