Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1105540	0.91[EUR][1000 genomes]
rs11935380	0.92[EUR][1000 genomes]
rs12331308	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1522571	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17730163	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17730210	0.93[EUR][1000 genomes]
rs1816810	0.98[ASN][1000 genomes]
rs28728039	0.89[EUR][1000 genomes]
rs28804991	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28822157	0.88[EUR][1000 genomes]
rs34035908	0.92[EUR][1000 genomes]
rs4692848	0.90[ASN][1000 genomes]
rs4692849	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55684987	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56120627	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56211035	0.84[EUR][1000 genomes]
rs56222995	0.93[EUR][1000 genomes]
rs58286773	0.98[ASN][1000 genomes]
rs58653762	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857326	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72696863	0.86[EUR][1000 genomes]
rs7665640	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685183	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171600400-171604000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:171601800-171603600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:171602600-171605400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:171603400-171603600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:171603400-171603600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:171603400-171603600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:171603400-171603600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:171603400-171604200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:171603400-171604200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:171603400-171604400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:171603400-171604600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:171603400-171604600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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