Variant report
| Variant | rs56211035 |
|---|---|
| Chromosome Location | chr4:171622791-171622792 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:171616881..171619381-chr4:171620954..171623355,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10002974 | 0.84[ASN][1000 genomes] |
| rs10004688 | 0.84[ASN][1000 genomes] |
| rs10007655 | 0.84[ASN][1000 genomes] |
| rs10012640 | 0.84[EUR][1000 genomes] |
| rs1105540 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11935380 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12331308 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1522571 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1533835 | 0.87[ASN][1000 genomes] |
| rs1533836 | 0.84[ASN][1000 genomes] |
| rs1533838 | 0.87[ASN][1000 genomes] |
| rs17056064 | 0.87[ASN][1000 genomes] |
| rs17662856 | 0.87[ASN][1000 genomes] |
| rs17730163 | 0.86[EUR][1000 genomes] |
| rs17730210 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28804991 | 0.82[EUR][1000 genomes] |
| rs34035908 | 0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34445115 | 0.98[ASN][1000 genomes] |
| rs4692849 | 0.86[EUR][1000 genomes] |
| rs55684987 | 0.82[EUR][1000 genomes] |
| rs56222995 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58653762 | 0.84[EUR][1000 genomes] |
| rs6857326 | 0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72696863 | 0.81[EUR][1000 genomes] |
| rs72981855 | 0.88[ASN][1000 genomes] |
| rs7665640 | 0.82[EUR][1000 genomes] |
| rs7685183 | 0.82[EUR][1000 genomes] |
| rs9991446 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596167 | chr4:171576294-171672038 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv881141 | chr4:171620514-171680223 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171620800-171624600 | Weak transcription | Aorta | Aorta |
| 2 | chr4:171621800-171624400 | Weak transcription | GM12878-XiMat | blood |
