Variant report

Variant	rs1105540
Chromosome Location	chr4:171623924-171623925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10002974	0.86[ASN][1000 genomes]
rs10004688	0.86[ASN][1000 genomes]
rs10007655	0.86[ASN][1000 genomes]
rs10012640	0.91[EUR][1000 genomes]
rs10029596	0.81[ASN][1000 genomes]
rs10520190	0.81[ASN][1000 genomes]
rs11935380	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331308	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522565	0.81[ASN][1000 genomes]
rs1522571	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1533835	0.85[ASN][1000 genomes]
rs1533836	0.86[ASN][1000 genomes]
rs1533838	0.85[ASN][1000 genomes]
rs17056064	0.85[ASN][1000 genomes]
rs17662856	0.85[ASN][1000 genomes]
rs17730163	0.93[EUR][1000 genomes]
rs17730210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730418	0.81[ASN][1000 genomes]
rs17730478	0.81[ASN][1000 genomes]
rs17730495	0.81[ASN][1000 genomes]
rs28485207	0.81[ASN][1000 genomes]
rs28544121	0.81[ASN][1000 genomes]
rs28633869	0.81[ASN][1000 genomes]
rs28640585	0.81[ASN][1000 genomes]
rs28728039	0.82[EUR][1000 genomes]
rs28804991	0.90[EUR][1000 genomes]
rs28822157	0.86[EUR][1000 genomes]
rs34035908	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34445115	1.00[ASN][1000 genomes]
rs4692849	0.93[EUR][1000 genomes]
rs55684987	0.90[EUR][1000 genomes]
rs56120627	0.86[EUR][1000 genomes]
rs56211035	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56222995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58653762	0.91[EUR][1000 genomes]
rs6857326	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72696863	0.88[EUR][1000 genomes]
rs72981855	0.86[ASN][1000 genomes]
rs7665640	0.90[EUR][1000 genomes]
rs7685183	0.90[EUR][1000 genomes]
rs9991446	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881141	chr4:171620514-171680223	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171620800-171624600	Weak transcription	Aorta	Aorta
2	chr4:171621800-171624400	Weak transcription	GM12878-XiMat	blood

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