Variant report

Variant	rs28728039
Chromosome Location	chr4:171596951-171596952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10012640	0.89[EUR][1000 genomes]
rs1105540	0.82[EUR][1000 genomes]
rs11935380	0.83[EUR][1000 genomes]
rs12331308	0.84[EUR][1000 genomes]
rs1522571	0.84[EUR][1000 genomes]
rs17730163	0.87[EUR][1000 genomes]
rs17730210	0.84[EUR][1000 genomes]
rs28804991	0.90[EUR][1000 genomes]
rs28822157	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34035908	0.83[EUR][1000 genomes]
rs4692849	0.87[EUR][1000 genomes]
rs55684987	0.90[EUR][1000 genomes]
rs56120627	0.87[EUR][1000 genomes]
rs56222995	0.84[EUR][1000 genomes]
rs58653762	0.89[EUR][1000 genomes]
rs72696863	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7665640	0.90[EUR][1000 genomes]
rs7685183	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171593400-171597200	Enhancers	HMEC	breast
2	chr4:171593400-171597200	Enhancers	NH-A	brain
3	chr4:171593800-171602200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:171594000-171601400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:171596400-171597000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:171596400-171597200	Enhancers	Osteobl	bone
7	chr4:171596400-171597400	Enhancers	GM12878-XiMat	blood
8	chr4:171596600-171597400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:171596800-171597000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:171596800-171597200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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