Variant report
| Variant | rs34035908 |
|---|---|
| Chromosome Location | chr4:171619107-171619108 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:171616881..171619381-chr4:171620954..171623355,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10002974 | 0.85[ASN][1000 genomes] |
| rs10004688 | 0.85[ASN][1000 genomes] |
| rs10007655 | 0.85[ASN][1000 genomes] |
| rs10012640 | 0.92[EUR][1000 genomes] |
| rs1105540 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11935380 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12331308 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1522571 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1533835 | 0.86[ASN][1000 genomes] |
| rs1533836 | 0.85[ASN][1000 genomes] |
| rs1533838 | 0.86[ASN][1000 genomes] |
| rs17056064 | 0.86[ASN][1000 genomes] |
| rs17662856 | 0.86[ASN][1000 genomes] |
| rs17730163 | 0.94[EUR][1000 genomes] |
| rs17730210 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28728039 | 0.83[EUR][1000 genomes] |
| rs28804991 | 0.91[EUR][1000 genomes] |
| rs28822157 | 0.87[EUR][1000 genomes] |
| rs34445115 | 0.99[ASN][1000 genomes] |
| rs4692849 | 0.94[EUR][1000 genomes] |
| rs55684987 | 0.91[EUR][1000 genomes] |
| rs56120627 | 0.87[EUR][1000 genomes] |
| rs56211035 | 0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56222995 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58653762 | 0.92[EUR][1000 genomes] |
| rs6857326 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72696863 | 0.89[EUR][1000 genomes] |
| rs72981855 | 0.87[ASN][1000 genomes] |
| rs7665640 | 0.91[EUR][1000 genomes] |
| rs7685183 | 0.91[EUR][1000 genomes] |
| rs9991446 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596167 | chr4:171576294-171672038 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171619000-171619800 | Active TSS | GM12878-XiMat | blood |
