Variant report

Variant	rs4692848
Chromosome Location	chr4:171601584-171601585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10012640	0.90[ASN][1000 genomes]
rs12331308	0.82[ASN][1000 genomes]
rs1522571	0.82[ASN][1000 genomes]
rs17730163	0.90[ASN][1000 genomes]
rs1816810	0.89[ASN][1000 genomes]
rs28804991	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4692849	0.90[ASN][1000 genomes]
rs55684987	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56120627	0.90[ASN][1000 genomes]
rs58286773	0.89[ASN][1000 genomes]
rs58653762	0.90[ASN][1000 genomes]
rs7665640	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7685183	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171593800-171602200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:171600400-171604000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:171601400-171601800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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