Variant report

Variant	rs28630791
Chromosome Location	chr18:28737320-28737321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16961382	1.00[AMR][1000 genomes]
rs28592770	1.00[AMR][1000 genomes]
rs61248090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6506888	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28710600-28740800	Weak transcription	Primary T cells from cord blood	blood
2	chr18:28730400-28740800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:28730600-28737400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:28730600-28742600	Weak transcription	Esophagus	oesophagus
5	chr18:28733400-28742000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr18:28734400-28741400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:28736400-28737600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:28736400-28737800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr18:28736800-28737400	Enhancers	Placenta	Placenta
10	chr18:28736800-28737600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:28736800-28737600	Flanking Active TSS	NHEK	skin
12	chr18:28736800-28737800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr18:28737000-28737400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr18:28737000-28737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr18:28737000-28737600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:28737000-28737800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:28737200-28737400	Enhancers	Fetal Kidney	kidney
18	chr18:28737200-28737600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:28737200-28737600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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