Variant report

Variant	rs16961382
Chromosome Location	chr18:28743316-28743317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28592770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630791	1.00[AMR][1000 genomes]
rs61248090	1.00[AMR][1000 genomes]
rs8091932	0.81[AFR][1000 genomes]
rs9946313	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv132191	chr18:28739028-28745912	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv131242	chr18:28739028-28748058	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28737400-28746400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr18:28742200-28743400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr18:28742600-28743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr18:28742800-28743400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr18:28742800-28743400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:28742800-28743400	Enhancers	HMEC	breast
7	chr18:28742800-28746600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr18:28743000-28743400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:28743000-28743400	Enhancers	NHEK	skin
10	chr18:28743200-28744600	Enhancers	Primary T cells from cord blood	blood
11	chr18:28743200-28756000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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