Variant report

Variant	rs9946313
Chromosome Location	chr18:28765195-28765196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16961382	0.82[AFR][1000 genomes]
rs16961408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118344	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28592770	0.82[AFR][1000 genomes]
rs7235472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72930455	0.83[EUR][1000 genomes]
rs72930463	0.83[EUR][1000 genomes]
rs8091932	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9944577	0.85[EUR][1000 genomes]
rs9951631	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9956904	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9960586	0.83[EUR][1000 genomes]
rs9960891	0.83[EUR][1000 genomes]
rs9966272	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28764400-28767000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:28764400-28771000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:28764800-28766000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr18:28764800-28766600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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