Variant report

Variant	rs28631283
Chromosome Location	chr17:38431478-38431479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38421614..38424378-chr17:38430990..38433490,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9895942	0.92[AFR][1000 genomes]
rs9899406	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38409600-38437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:38409800-38434800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr17:38409800-38439400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:38411000-38438800	Strong transcription	Fetal Intestine Small	intestine
5	chr17:38411000-38439800	Strong transcription	Fetal Stomach	stomach
6	chr17:38412200-38434800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:38412200-38438400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr17:38412200-38439800	Strong transcription	Fetal Thymus	thymus
9	chr17:38412400-38437600	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr17:38412400-38438600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:38412400-38438600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr17:38412600-38437600	Strong transcription	Placenta	Placenta
13	chr17:38412600-38438600	Strong transcription	Fetal Intestine Large	intestine
14	chr17:38412600-38439200	Strong transcription	Fetal Muscle Leg	muscle
15	chr17:38412600-38439200	Strong transcription	Lung	lung
16	chr17:38413000-38438800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:38416200-38436400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr17:38417600-38439400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr17:38420400-38439200	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr17:38421400-38435200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr17:38422200-38432200	Weak transcription	Small Intestine	intestine
22	chr17:38422200-38435400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr17:38422800-38433000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr17:38423200-38437400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr17:38423400-38431600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr17:38423600-38437800	Weak transcription	Fetal Heart	heart
27	chr17:38423800-38434200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr17:38424600-38435200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr17:38425400-38435000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:38426000-38437000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr17:38426200-38436600	Strong transcription	A549	lung
32	chr17:38426200-38437600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:38426400-38438800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:38426600-38435200	Strong transcription	Brain Germinal Matrix	brain
35	chr17:38426600-38437400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr17:38426600-38437600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr17:38426600-38437800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:38426600-38437800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr17:38426600-38437800	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr17:38426600-38437800	Strong transcription	HepG2	liver
41	chr17:38426600-38438000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr17:38426600-38438000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:38426600-38438000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr17:38426600-38438600	Strong transcription	GM12878-XiMat	blood
45	chr17:38426600-38438800	Strong transcription	Dnd41	blood
46	chr17:38426600-38439000	Strong transcription	Primary T cells from cord blood	blood
47	chr17:38426600-38439000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr17:38426600-38439200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr17:38426600-38439200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr17:38426600-38440600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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