Variant report

Variant	rs9899406
Chromosome Location	chr17:38446433-38446434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FAM48A	chr17:38446416-38446562	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38278634..38280743-chr17:38443874..38446945,3	K562	blood:
2	chr17:38331593..38335002-chr17:38443466..38446781,3	MCF-7	breast:
3	chr17:38445598..38447328-chr17:38470117..38471980,2	MCF-7	breast:
4	chr17:38373931..38375923-chr17:38445660..38448267,2	K562	blood:
5	chr17:38444029..38445656-chr17:38445740..38447882,2	MCF-7	breast:
6	chr17:38350624..38352152-chr17:38445589..38447387,2	K562	blood:

No data

Variant related genes	Relation type
CDC6	TF binding region
ENSG00000171475	Chromatin interaction
ENSG00000188895	Chromatin interaction
ENSG00000108352	Chromatin interaction
ENSG00000094804	Chromatin interaction

rs_ID	r²[population]
rs11657772	1.00[AMR][1000 genomes]
rs12936773	1.00[AMR][1000 genomes]
rs28631283	0.92[AFR][1000 genomes]
rs9894493	1.00[AMR][1000 genomes]
rs9895942	1.00[ASW][hapmap];0.84[LWK][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes]

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38444600-38446600	Weak transcription	Gastric	stomach
2	chr17:38444600-38446600	Weak transcription	HSMMtube	muscle
3	chr17:38444600-38446800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:38444600-38446800	Weak transcription	Colon Smooth Muscle	Colon
5	chr17:38444600-38451600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:38444600-38454600	Weak transcription	Ovary	ovary
7	chr17:38444600-38459400	Weak transcription	Brain Angular Gyrus	brain
8	chr17:38444600-38459400	Weak transcription	Spleen	Spleen
9	chr17:38444600-38459600	Weak transcription	Brain Anterior Caudate	brain
10	chr17:38444600-38459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:38444600-38459600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr17:38444800-38446600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr17:38444800-38446600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:38444800-38446600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:38444800-38446600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:38444800-38446800	Weak transcription	Liver	Liver
17	chr17:38444800-38446800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr17:38444800-38446800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr17:38444800-38446800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr17:38444800-38447000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr17:38444800-38447200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:38444800-38447200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:38444800-38449400	Weak transcription	Adipose Nuclei	Adipose
24	chr17:38444800-38451800	Weak transcription	Fetal Brain Female	brain
25	chr17:38444800-38459200	Weak transcription	Fetal Intestine Large	intestine
26	chr17:38444800-38459400	Weak transcription	Fetal Kidney	kidney
27	chr17:38444800-38459400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr17:38444800-38459600	Weak transcription	Right Ventricle	heart
29	chr17:38444800-38459600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr17:38444800-38462600	Weak transcription	Esophagus	oesophagus
31	chr17:38445000-38452000	Weak transcription	Fetal Intestine Small	intestine
32	chr17:38445000-38459600	Weak transcription	Colonic Mucosa	Colon
33	chr17:38445200-38446600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr17:38445200-38447800	Transcr. at gene 5' and 3'	Dnd41	blood
35	chr17:38445400-38446600	Weak transcription	Placenta	Placenta
36	chr17:38445400-38446800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr17:38445400-38446800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr17:38445400-38447000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr17:38445400-38447200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr17:38445400-38447400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr17:38445400-38447400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr17:38445400-38447400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr17:38445400-38447400	Genic enhancers	Osteobl	bone
44	chr17:38445400-38447600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr17:38445400-38447600	Weak transcription	Fetal Muscle Leg	muscle
46	chr17:38445400-38447800	Transcr. at gene 5' and 3'	Hela-S3	cervix
47	chr17:38445400-38449400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr17:38445400-38451800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr17:38445400-38452000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr17:38445400-38459400	Weak transcription	Primary T cells from cord blood	blood

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