The 2.0 version of rSNPBase

Variant report

Variant rs28633478
Chromosome Location chr4:129310972-129310973
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:129301800-129314000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr4:129305200-129314400 Weak transcription Small Intestine intestine
3 chr4:129306600-129311400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr4:129307200-129312000 Enhancers Fetal Heart heart
5 chr4:129307600-129311000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr4:129307800-129312000 Enhancers Fetal Brain Male brain
7 chr4:129308200-129313000 Enhancers A549 lung
8 chr4:129308200-129317000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr4:129308400-129311000 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr4:129308400-129311400 Enhancers Psoas Muscle Psoas
11 chr4:129308400-129313800 Weak transcription Fetal Intestine Small intestine
12 chr4:129308600-129311000 Weak transcription Fetal Lung lung
13 chr4:129308800-129311000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr4:129308800-129311400 Enhancers Rectal Smooth Muscle rectum
15 chr4:129309000-129311000 Weak transcription Brain Anterior Caudate brain
16 chr4:129309000-129311200 Weak transcription Pancreas Pancrea
17 chr4:129309000-129311800 Weak transcription Brain Cingulate Gyrus brain
18 chr4:129309000-129312000 Weak transcription Brain Inferior Temporal Lobe brain
19 chr4:129309000-129314000 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr4:129309000-129314400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr4:129309000-129314600 Weak transcription Gastric stomach
22 chr4:129309200-129311200 Weak transcription Fetal Stomach stomach
23 chr4:129309200-129311400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr4:129309200-129314000 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr4:129309400-129314000 Weak transcription K562 blood
26 chr4:129309600-129311000 Weak transcription NHLF lung
27 chr4:129309600-129311200 Weak transcription Adipose Nuclei Adipose
28 chr4:129309600-129311200 Weak transcription Right Ventricle heart
29 chr4:129309600-129311400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr4:129309600-129312200 Enhancers Skeletal Muscle Female skeletal muscle
31 chr4:129309600-129312400 Weak transcription Brain Angular Gyrus brain
32 chr4:129309600-129314000 Weak transcription HSMM muscle
33 chr4:129309600-129314400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr4:129309600-129314600 Weak transcription Left Ventricle heart
35 chr4:129309800-129311000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr4:129309800-129311200 Weak transcription Stomach Smooth Muscle stomach
37 chr4:129309800-129314000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr4:129309800-129314000 Weak transcription Duodenum Mucosa Duodenum
39 chr4:129309800-129314000 Weak transcription Osteobl bone
40 chr4:129309800-129314400 Weak transcription HSMMtube muscle
41 chr4:129310000-129311000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr4:129310000-129311000 Weak transcription Colon Smooth Muscle Colon
43 chr4:129310000-129311000 Weak transcription Fetal Muscle Leg muscle
44 chr4:129310000-129311000 Weak transcription HMEC breast
45 chr4:129310000-129312000 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr4:129310000-129312600 Weak transcription Stomach Mucosa stomach
47 chr4:129310000-129313800 Weak transcription NHDF-Ad bronchial
48 chr4:129310000-129314000 Weak transcription Muscle Satellite Cultured Cells --
49 chr4:129310000-129314000 Weak transcription Hela-S3 cervix
50 chr4:129310200-129311000 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015