Variant report

Variant	rs59874564
Chromosome Location	chr4:129344780-129344781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11940440	1.00[AMR][1000 genomes]
rs11942008	1.00[AMR][1000 genomes]
rs11942823	1.00[AMR][1000 genomes]
rs11944086	1.00[AMR][1000 genomes]
rs11947006	1.00[AMR][1000 genomes]
rs17013071	1.00[AMR][1000 genomes]
rs28522396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633478	1.00[AFR][1000 genomes]
rs34883691	1.00[AMR][1000 genomes]
rs56095603	1.00[AMR][1000 genomes]
rs56317429	1.00[AMR][1000 genomes]
rs73850310	1.00[AMR][1000 genomes]
rs73850312	1.00[AMR][1000 genomes]
rs73850313	1.00[AMR][1000 genomes]
rs73850314	1.00[AMR][1000 genomes]
rs73850315	1.00[AMR][1000 genomes]
rs73850318	1.00[AMR][1000 genomes]
rs73850321	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129338200-129345600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129344000-129344800	Weak transcription	Pancreas	Pancrea
3	chr4:129344600-129345000	Enhancers	Stomach Mucosa	stomach
4	chr4:129344600-129347000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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