Variant report

Variant	rs11942823
Chromosome Location	chr4:129179135-129179136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000868	0.80[AFR][1000 genomes]
rs11940440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11942008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947006	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28522396	1.00[AMR][1000 genomes]
rs28589597	0.80[AFR][1000 genomes]
rs34883691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56095603	1.00[AMR][1000 genomes]
rs56317429	1.00[AMR][1000 genomes]
rs59874564	1.00[AMR][1000 genomes]
rs73850310	1.00[AMR][1000 genomes]
rs73850312	1.00[AMR][1000 genomes]
rs73850313	1.00[AMR][1000 genomes]
rs73850314	1.00[AMR][1000 genomes]
rs73850315	1.00[AMR][1000 genomes]
rs73850318	1.00[AMR][1000 genomes]
rs73850321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129173800-129207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129176200-129179200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:129178400-129179400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:129178600-129190000	Weak transcription	NHDF-Ad	bronchial
5	chr4:129179000-129179400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr4:129179000-129179400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:129179000-129179400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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