Variant report

Variant	rs73850318
Chromosome Location	chr4:129296374-129296375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000271698	Chromatin interaction
ENSG00000214597	Chromatin interaction
ENSG00000164040	Chromatin interaction
ENSG00000182325	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11940440	1.00[AMR][1000 genomes]
rs11942008	1.00[AMR][1000 genomes]
rs11942823	1.00[AMR][1000 genomes]
rs11944086	1.00[AMR][1000 genomes]
rs11947006	1.00[AMR][1000 genomes]
rs17013071	1.00[AMR][1000 genomes]
rs28522396	1.00[AMR][1000 genomes]
rs34883691	1.00[AMR][1000 genomes]
rs56095603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56317429	1.00[AMR][1000 genomes]
rs59874564	1.00[AMR][1000 genomes]
rs73850310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850312	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129290600-129297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:129290600-129297600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:129290800-129297400	Weak transcription	Fetal Intestine Small	intestine
4	chr4:129292800-129297600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:129292800-129306600	Weak transcription	Psoas Muscle	Psoas
6	chr4:129293000-129298000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:129293600-129299800	Weak transcription	Aorta	Aorta
8	chr4:129295400-129300800	Weak transcription	Fetal Heart	heart
9	chr4:129295600-129296600	Enhancers	Brain Angular Gyrus	brain
10	chr4:129295800-129297000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:129296000-129296400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:129296000-129301000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links