Variant report

Variant	rs73850315
Chromosome Location	chr4:129288993-129288994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11940440	1.00[AMR][1000 genomes]
rs11942008	1.00[AMR][1000 genomes]
rs11942823	1.00[AMR][1000 genomes]
rs11944086	1.00[AMR][1000 genomes]
rs11947006	1.00[AMR][1000 genomes]
rs17013071	1.00[AMR][1000 genomes]
rs28522396	1.00[AMR][1000 genomes]
rs34883691	1.00[AMR][1000 genomes]
rs56095603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56317429	1.00[AMR][1000 genomes]
rs57848834	0.82[AFR][1000 genomes]
rs59874564	1.00[AMR][1000 genomes]
rs73850310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129280400-129290400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:129283200-129291600	Weak transcription	Fetal Heart	heart
4	chr4:129283200-129292000	Weak transcription	Osteobl	bone
5	chr4:129283400-129291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:129288600-129289000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:129288600-129290800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:129288800-129289000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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