Variant report
Variant | rs2864091 |
---|---|
Chromosome Location | chr19:51975412-51975413 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000105379 | Chromatin interaction |
ENSG00000268520 | Chromatin interaction |
ENSG00000160318 | Chromatin interaction |
ENSG00000269403 | Chromatin interaction |
ENSG00000269580 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10424482 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10424572 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10424783 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10424804 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11878257 | 1.00[EUR][1000 genomes] |
rs11878282 | 1.00[EUR][1000 genomes] |
rs11878388 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11881105 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16982729 | 0.98[EUR][1000 genomes] |
rs17206902 | 1.00[EUR][1000 genomes] |
rs185254 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2607257 | 1.00[EUR][1000 genomes] |
rs2607258 | 1.00[EUR][1000 genomes] |
rs2607259 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2607260 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs28539101 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28607420 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2864090 | 1.00[EUR][1000 genomes] |
rs2864092 | 1.00[EUR][1000 genomes] |
rs2864093 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36501 | 0.84[AFR][1000 genomes] |
rs36503 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs56799568 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61201251 | 0.98[EUR][1000 genomes] |
rs62115066 | 0.98[EUR][1000 genomes] |
rs62116369 | 1.00[EUR][1000 genomes] |
rs62116370 | 1.00[EUR][1000 genomes] |
rs62116371 | 1.00[EUR][1000 genomes] |
rs62116417 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62116418 | 0.87[EUR][1000 genomes] |
rs62116419 | 0.87[EUR][1000 genomes] |
rs62116420 | 0.87[EUR][1000 genomes] |
rs62116422 | 0.87[EUR][1000 genomes] |
rs7246811 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs8101777 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs8107537 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066308 | chr19:51680133-52103974 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
2 | nsv544049 | chr19:51680133-52103974 | Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
3 | nsv458724 | chr19:51925519-51975723 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv579965 | chr19:51925519-51975723 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv544051 | chr19:51944903-52147459 | Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
6 | nsv961163 | chr19:51971394-51976393 | Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:51972000-51976000 | Weak transcription | Duodenum Mucosa | Duodenum |
2 | chr19:51972600-51976400 | Weak transcription | Primary hematopoietic stem cells | blood |
3 | chr19:51974800-51976000 | Enhancers | K562 | blood |
4 | chr19:51975000-51976600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |