Variant report
Variant | rs61201251 |
---|---|
Chromosome Location | chr19:51979247-51979248 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:61)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:51979244-51979294 | NH-A | brain: | n/a |
2 | chr19:51979244-51979294 | AG10803 | skin: | n/a |
3 | chr19:51979244-51979294 | PrEC | prostate: | n/a |
4 | chr19:51979244-51979294 | MCF-7 | breast: | n/a |
5 | chr19:51979244-51979294 | HRCEpiC | kidney: | n/a |
6 | chr19:51979244-51979294 | HAEpiC | amniotic membrane: | n/a |
7 | chr19:51979244-51979294 | SK-N-SH_RA | brain: | n/a |
8 | chr19:51979244-51979294 | HUVEC | blood vessel: | n/a |
9 | chr19:51979244-51979294 | RPTEC | kidney: | n/a |
10 | chr19:51979244-51979294 | AoSMC | blood vessel: | n/a |
11 | chr19:51979244-51979294 | GM12878 | blood: | n/a |
12 | chr19:51979244-51979294 | HMEC | breast: | n/a |
13 | chr19:51979244-51979294 | SAEC | small airway: | n/a |
14 | chr19:51979244-51979294 | SK-N-MC | brain: | n/a |
15 | chr19:51979244-51979294 | Hepatocyte | liver: | n/a |
16 | chr19:51979244-51979294 | HNPCEpiC | eye: | n/a |
17 | chr19:51979244-51979294 | HL-60 | blood: | n/a |
18 | chr19:51979244-51979294 | IMR90 | lung: | fetal |
19 | chr19:51979244-51979294 | HIPEpiC | eye: | n/a |
20 | chr19:51979244-51979294 | BE2_C | brain: | n/a |
21 | chr19:51979244-51979294 | HEEpiC | esophagus: | n/a |
22 | chr19:51979244-51979294 | HCM | heart: | n/a |
23 | chr19:51979244-51979294 | AG09319 | gingival: | n/a |
24 | chr19:51979244-51979294 | SKMC | muscle: | n/a |
25 | chr19:51979244-51979294 | K562 | blood: | n/a |
26 | chr19:51979244-51979294 | T-47D | breast: | n/a |
27 | chr19:51979244-51979294 | HRPEpiC | eye: | n/a |
28 | chr19:51979244-51979294 | PANC-1 | pancreas: | n/a |
29 | chr19:51979244-51979294 | LNCaP | prostate: | n/a |
30 | chr19:51979244-51979294 | NT2-D1 | testis: | n/a |
31 | chr19:51979244-51979294 | GM12891 | blood: | n/a |
32 | chr19:51979244-51979294 | HCPEpiC | choroid plexus: | n/a |
33 | chr19:51979244-51979294 | Jurkat | blood: | n/a |
34 | chr19:51979244-51979294 | ProgFib | skin: | n/a |
35 | chr19:51979244-51979294 | H1-hESC | embryonic stem cell: | embryo |
36 | chr19:51979244-51979294 | A549 | lung: | n/a |
37 | chr19:51979244-51979294 | HRE | kidney: | n/a |
38 | chr19:51979244-51979294 | Hela-S3 | cervix: | n/a |
39 | chr19:51979244-51979294 | CMK | blood: | n/a |
40 | chr19:51979244-51979294 | HCF | heart: | n/a |
41 | chr19:51979244-51979294 | PFSK-1 | brain: | n/a |
42 | chr19:51979244-51979294 | SK-N-SH | brain: | n/a |
43 | chr19:51979244-51979294 | HPAEpiC | pulmonary alveolar: | n/a |
44 | chr19:51979244-51979294 | GM06990 | blood: | n/a |
45 | chr19:51979244-51979294 | MCF10A-Er-Src | breast: | n/a |
46 | chr19:51979244-51979294 | AG04449 | skin: | fetal |
47 | chr19:51979244-51979294 | Caco-2 | colon: | n/a |
48 | chr19:51979244-51979294 | NB4 | blood: | n/a |
49 | chr19:51979244-51979294 | ECC-1 | luminal epithelium: | n/a |
50 | chr19:51979244-51979294 | HCT-116 | colon: | n/a |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAM18 | TF binding region |
CEACAM18 | CpG island |
ENSG00000268957 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10424482 | 0.89[EUR][1000 genomes] |
rs10424572 | 1.00[EUR][1000 genomes] |
rs10424783 | 0.89[EUR][1000 genomes] |
rs10424804 | 0.89[EUR][1000 genomes] |
rs11878257 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11878282 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11878388 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11881105 | 0.92[EUR][1000 genomes] |
rs16982729 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16982732 | 0.81[ASN][1000 genomes] |
rs17206902 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs185254 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2607257 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2607258 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2607259 | 0.98[EUR][1000 genomes] |
rs2607260 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs28539101 | 0.98[EUR][1000 genomes] |
rs28607420 | 0.89[EUR][1000 genomes] |
rs2864090 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2864091 | 0.98[EUR][1000 genomes] |
rs2864092 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2864093 | 0.98[EUR][1000 genomes] |
rs36503 | 0.97[EUR][1000 genomes] |
rs56799568 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62115066 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62116369 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62116370 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62116371 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62116417 | 1.00[EUR][1000 genomes] |
rs62116418 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs62116419 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs62116420 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs62116422 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7246811 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8101768 | 0.85[AFR][1000 genomes] |
rs8101777 | 0.89[EUR][1000 genomes] |
rs8107537 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066308 | chr19:51680133-52103974 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
2 | nsv544049 | chr19:51680133-52103974 | Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
3 | nsv544051 | chr19:51944903-52147459 | Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:51975800-51981600 | Enhancers | Fetal Intestine Small | intestine |
2 | chr19:51975800-51981800 | Enhancers | Fetal Intestine Large | intestine |
3 | chr19:51978000-51980400 | Weak transcription | K562 | blood |
4 | chr19:51978400-51979600 | Enhancers | Stomach Mucosa | stomach |
5 | chr19:51978400-51981400 | Weak transcription | Duodenum Mucosa | Duodenum |
6 | chr19:51979200-51982000 | Weak transcription | HepG2 | liver |