Variant report

Variant	rs28645812
Chromosome Location	chr8:95375639-95375640
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95369732..95371787-chr8:95374692..95376567,2	MCF-7	breast:
2	chr8:95370171..95372386-chr8:95374726..95376364,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12114828	1.00[EUR][1000 genomes]
rs16916792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28460195	1.00[EUR][1000 genomes]
rs35529196	1.00[EUR][1000 genomes]
rs7001310	1.00[EUR][1000 genomes]
rs7015210	1.00[EUR][1000 genomes]
rs7815035	1.00[EUR][1000 genomes]
rs7823402	1.00[EUR][1000 genomes]
rs7824763	1.00[EUR][1000 genomes]
rs7834315	1.00[EUR][1000 genomes]
rs7841998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:95365800-95378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:95365800-95385000	Weak transcription	NHEK	skin
4	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:95369400-95383600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:95370000-95379000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:95370000-95380600	Weak transcription	A549	lung
8	chr8:95370000-95382200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:95370000-95385000	Weak transcription	NHLF	lung
10	chr8:95370000-95385200	Weak transcription	HSMM	muscle
11	chr8:95370000-95385200	Weak transcription	HUVEC	blood vessel
12	chr8:95370200-95378800	Weak transcription	NH-A	brain
13	chr8:95370200-95379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:95370200-95384800	Weak transcription	HMEC	breast
15	chr8:95370400-95378800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:95370600-95381800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:95370600-95385400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:95370800-95383400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:95372000-95414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:95372400-95384400	Weak transcription	NHDF-Ad	bronchial
21	chr8:95372400-95385000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:95372800-95384400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:95372800-95384800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:95372800-95385200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:95372800-95391200	Weak transcription	HepG2	liver
26	chr8:95373000-95376000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:95373800-95378800	Weak transcription	Fetal Brain Male	brain
28	chr8:95373800-95381600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:95373800-95385600	Weak transcription	Fetal Kidney	kidney
30	chr8:95373800-95391600	Weak transcription	Fetal Lung	lung
31	chr8:95374000-95390400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:95374000-95391000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:95374400-95379000	Weak transcription	Brain Germinal Matrix	brain
34	chr8:95374400-95390400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:95374600-95385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:95374600-95392200	Weak transcription	Fetal Intestine Large	intestine
37	chr8:95374800-95391400	Weak transcription	Fetal Intestine Small	intestine
38	chr8:95375000-95389400	Weak transcription	Fetal Thymus	thymus
39	chr8:95375600-95377000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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