Variant report

Variant	rs7824763
Chromosome Location	chr8:95518460-95518461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95484689..95488036-chr8:95515578..95521177,5	K562	blood:
2	chr8:95518061..95519974-chr8:95527304..95530203,2	MCF-7	breast:
3	chr8:95516808..95519072-chr8:95523544..95526072,2	MCF-7	breast:
4	chr8:95516824..95519070-chr8:95519819..95522631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164944	Chromatin interaction
ENSG00000197275	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12114828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16916792	1.00[EUR][1000 genomes]
rs28460195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645812	1.00[EUR][1000 genomes]
rs35529196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58615978	1.00[EUR][1000 genomes]
rs6471458	1.00[EUR][1000 genomes]
rs7001310	1.00[EUR][1000 genomes]
rs7003975	1.00[EUR][1000 genomes]
rs7015210	1.00[EUR][1000 genomes]
rs73265267	1.00[EUR][1000 genomes]
rs7815035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818717	1.00[EUR][1000 genomes]
rs7823402	1.00[EUR][1000 genomes]
rs7828419	1.00[EUR][1000 genomes]
rs7834315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95493000-95549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:95495200-95538400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:95495600-95541000	Weak transcription	Esophagus	oesophagus
4	chr8:95497200-95564200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:95498400-95554000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:95499200-95519000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:95499200-95519000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:95499400-95519000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:95499400-95519000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr8:95499400-95533400	Strong transcription	Placenta	Placenta
11	chr8:95499400-95552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:95500200-95519000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr8:95500400-95524600	Weak transcription	Stomach Mucosa	stomach
14	chr8:95501200-95541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:95504000-95521800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:95504000-95522000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:95504400-95523400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:95505600-95521600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:95506000-95522000	Weak transcription	HMEC	breast
20	chr8:95508800-95522600	Weak transcription	Brain Substantia Nigra	brain
21	chr8:95509000-95522000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:95509600-95522000	Weak transcription	NHEK	skin
23	chr8:95511000-95527400	Weak transcription	Pancreas	Pancrea
24	chr8:95511200-95527400	Weak transcription	Gastric	stomach
25	chr8:95511200-95530600	Weak transcription	Aorta	Aorta
26	chr8:95511600-95522600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:95511800-95521200	Weak transcription	HepG2	liver
28	chr8:95512200-95522000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr8:95512600-95524600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:95512600-95527800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:95513000-95521800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:95513600-95519000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:95513600-95530000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:95513800-95518800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:95514000-95519000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr8:95514600-95519800	Weak transcription	Fetal Intestine Small	intestine
37	chr8:95514800-95519000	Strong transcription	Fetal Intestine Large	intestine
38	chr8:95515000-95527600	Weak transcription	Ovary	ovary
39	chr8:95515200-95518800	Strong transcription	Adipose Nuclei	Adipose
40	chr8:95515400-95518800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:95515400-95519000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr8:95515600-95519000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:95515600-95521800	Weak transcription	Fetal Kidney	kidney
44	chr8:95515600-95534200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr8:95516000-95519000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:95516000-95519000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:95516000-95521000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr8:95516200-95519000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:95516200-95519000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:95516200-95519000	Strong transcription	Primary B cells from cord blood	blood

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