Variant report

Variant	rs28646154
Chromosome Location	chr8:110543529-110543530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59024706	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73317043	1.00[EUR][1000 genomes]
rs73700659	0.93[EUR][1000 genomes]
rs7838445	0.93[EUR][1000 genomes]
rs7839449	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110541000-110544400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr8:110542800-110544400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:110543000-110543600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:110543200-110550600	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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