Variant report

Variant	rs286498
Chromosome Location	chr11:85193122-85193123
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1072253	0.93[ASN][1000 genomes]
rs10751126	0.97[ASN][1000 genomes]
rs1118578	0.93[ASN][1000 genomes]
rs11234359	0.83[ASN][1000 genomes]
rs1160187	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1160188	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11603984	0.83[ASN][1000 genomes]
rs11605203	0.81[ASN][1000 genomes]
rs11607685	0.90[ASN][1000 genomes]
rs1354397	0.87[ASN][1000 genomes]
rs1425223	0.80[ASN][1000 genomes]
rs1504027	0.87[ASN][1000 genomes]
rs1504029	0.86[ASN][1000 genomes]
rs158217	0.94[ASN][1000 genomes]
rs166998	0.93[ASN][1000 genomes]
rs1806414	0.89[ASN][1000 genomes]
rs184057	0.95[ASN][1000 genomes]
rs185932	0.94[ASN][1000 genomes]
rs1863256	0.87[ASN][1000 genomes]
rs207060	0.98[ASN][1000 genomes]
rs2175189	0.89[ASN][1000 genomes]
rs2457419	0.81[ASN][1000 genomes]
rs2512800	0.98[ASN][1000 genomes]
rs2512803	0.92[ASN][1000 genomes]
rs286494	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs286495	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286496	0.98[ASN][1000 genomes]
rs286499	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286508	0.90[ASN][1000 genomes]
rs286509	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs286510	0.93[ASN][1000 genomes]
rs286512	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs286521	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs286522	0.98[ASN][1000 genomes]
rs286523	0.98[ASN][1000 genomes]
rs286524	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs286525	0.98[ASN][1000 genomes]
rs286526	0.96[ASN][1000 genomes]
rs286527	0.95[ASN][1000 genomes]
rs286529	0.94[ASN][1000 genomes]
rs286530	0.97[ASN][1000 genomes]
rs286531	0.97[ASN][1000 genomes]
rs286534	0.95[ASN][1000 genomes]
rs286535	0.89[ASN][1000 genomes]
rs286537	0.97[ASN][1000 genomes]
rs286538	0.95[ASN][1000 genomes]
rs286539	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs286540	0.95[ASN][1000 genomes]
rs286541	0.95[ASN][1000 genomes]
rs286542	0.93[ASN][1000 genomes]
rs35097455	0.85[ASN][1000 genomes]
rs4943923	0.84[ASN][1000 genomes]
rs4944520	0.87[ASN][1000 genomes]
rs55933855	0.84[ASN][1000 genomes]
rs56238215	0.85[ASN][1000 genomes]
rs56256400	0.84[ASN][1000 genomes]
rs56273824	0.83[ASN][1000 genomes]
rs56321405	0.83[ASN][1000 genomes]
rs58757261	0.91[ASN][1000 genomes]
rs58930391	0.87[ASN][1000 genomes]
rs59082411	0.85[ASN][1000 genomes]
rs60484561	0.83[ASN][1000 genomes]
rs61286868	0.81[ASN][1000 genomes]
rs62388	0.94[ASN][1000 genomes]
rs7119372	0.92[ASN][1000 genomes]
rs73499156	0.83[ASN][1000 genomes]
rs73499163	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85181800-85194800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:85184000-85194800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:85184200-85194800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:85184400-85194800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:85184400-85194800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:85187200-85194800	Weak transcription	Fetal Lung	lung
7	chr11:85192600-85193200	Enhancers	Right Ventricle	heart
8	chr11:85192800-85193600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:85192800-85193600	ZNF genes & repeats	Pancreas	Pancrea

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