Variant report
Variant | rs2175189 |
---|---|
Chromosome Location | chr11:85220457-85220458 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10501595 | 0.85[CEU][hapmap];0.89[CHB][hapmap] |
rs1072253 | 0.91[ASN][1000 genomes] |
rs10751126 | 0.92[ASN][1000 genomes] |
rs1118578 | 0.91[ASN][1000 genomes] |
rs11234359 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes] |
rs1160187 | 0.85[ASN][1000 genomes] |
rs1160188 | 0.85[ASN][1000 genomes] |
rs11603984 | 0.81[ASN][1000 genomes] |
rs11607685 | 0.88[ASN][1000 genomes] |
rs1192 | 0.89[CHB][hapmap] |
rs1214001 | 0.89[CHB][hapmap] |
rs1354397 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.86[ASN][1000 genomes] |
rs1504027 | 0.85[ASN][1000 genomes] |
rs1504029 | 0.85[ASN][1000 genomes] |
rs158217 | 0.92[ASN][1000 genomes] |
rs166998 | 0.91[ASN][1000 genomes] |
rs17208492 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |
rs17208519 | 0.85[CEU][hapmap];0.89[CHB][hapmap] |
rs17810659 | 0.85[CEU][hapmap];0.89[CHB][hapmap] |
rs1806414 | 0.88[ASN][1000 genomes] |
rs184057 | 0.94[ASN][1000 genomes] |
rs185932 | 0.87[ASN][1000 genomes] |
rs1863256 | 0.85[ASN][1000 genomes] |
rs1892872 | 0.89[CHB][hapmap] |
rs1991923 | 0.90[CHB][hapmap] |
rs207060 | 0.90[ASN][1000 genomes] |
rs2290823 | 0.89[CHB][hapmap] |
rs2467059 | 0.89[CHB][hapmap] |
rs2512800 | 0.90[ASN][1000 genomes] |
rs2512803 | 0.91[ASN][1000 genomes] |
rs286494 | 0.89[ASN][1000 genomes] |
rs286495 | 0.89[ASN][1000 genomes] |
rs286496 | 0.87[ASN][1000 genomes] |
rs286498 | 0.89[ASN][1000 genomes] |
rs286499 | 0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes] |
rs286508 | 0.89[ASN][1000 genomes] |
rs286509 | 0.94[ASN][1000 genomes] |
rs286510 | 0.91[ASN][1000 genomes] |
rs286512 | 0.94[ASN][1000 genomes] |
rs286513 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
rs286515 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap] |
rs286516 | 0.80[EUR][1000 genomes] |
rs286521 | 0.90[ASN][1000 genomes] |
rs286522 | 0.90[ASN][1000 genomes] |
rs286523 | 0.90[ASN][1000 genomes] |
rs286524 | 0.90[ASN][1000 genomes] |
rs286525 | 0.90[ASN][1000 genomes] |
rs286526 | 0.88[ASN][1000 genomes] |
rs286527 | 0.88[ASN][1000 genomes] |
rs286529 | 0.87[ASN][1000 genomes] |
rs286530 | 0.89[ASN][1000 genomes] |
rs286531 | 0.92[ASN][1000 genomes] |
rs286534 | 0.91[ASN][1000 genomes] |
rs286535 | 0.85[ASN][1000 genomes] |
rs286537 | 0.92[ASN][1000 genomes] |
rs286538 | 0.94[ASN][1000 genomes] |
rs286539 | 0.94[ASN][1000 genomes] |
rs286540 | 0.94[ASN][1000 genomes] |
rs286541 | 0.94[ASN][1000 genomes] |
rs286542 | 0.91[ASN][1000 genomes] |
rs290177 | 0.89[CHB][hapmap] |
rs290182 | 0.89[CHB][hapmap] |
rs290186 | 0.89[CHB][hapmap] |
rs35097455 | 0.83[ASN][1000 genomes] |
rs4943918 | 0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap] |
rs4943925 | 1.00[CEU][hapmap];0.85[CHB][hapmap] |
rs4944520 | 0.85[ASN][1000 genomes] |
rs4944522 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4944529 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |
rs4944531 | 0.89[CHB][hapmap] |
rs55933855 | 0.83[ASN][1000 genomes] |
rs56238215 | 0.83[ASN][1000 genomes] |
rs56256400 | 0.83[ASN][1000 genomes] |
rs56273824 | 0.81[ASN][1000 genomes] |
rs56321405 | 0.81[ASN][1000 genomes] |
rs56579 | 0.89[CHB][hapmap] |
rs58757261 | 0.89[ASN][1000 genomes] |
rs58930391 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59082411 | 0.83[ASN][1000 genomes] |
rs60484561 | 0.81[ASN][1000 genomes] |
rs62388 | 0.92[ASN][1000 genomes] |
rs7110363 | 0.95[CHB][hapmap];0.84[JPT][hapmap] |
rs7119372 | 0.91[ASN][1000 genomes] |
rs7119617 | 0.89[CHB][hapmap] |
rs73499156 | 0.81[ASN][1000 genomes] |
rs73499163 | 0.81[ASN][1000 genomes] |
rs7943586 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |
rs7948778 | 0.89[CHB][hapmap] |
rs881121 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |
rs947861 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |
rs947863 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[TSI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
2 | nsv898044 | chr11:84895033-85220773 | ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
3 | nsv1051155 | chr11:85006564-85721261 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
4 | nsv541110 | chr11:85006564-85721261 | Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
5 | nsv1035905 | chr11:85130543-85220773 | Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
6 | nsv1050363 | chr11:85163437-85293233 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
7 | nsv541111 | chr11:85163437-85293233 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
8 | nsv898046 | chr11:85180409-85300458 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
9 | nsv898047 | chr11:85180409-85377707 | Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
10 | esv2758279 | chr11:85180480-85603988 | Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
11 | esv2759845 | chr11:85180480-85603988 | Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
12 | nsv898048 | chr11:85206156-85404138 | Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:85195200-85238200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr11:85220400-85220600 | ZNF genes & repeats | Pancreas | Pancrea |