Variant report

Variant	rs286516
Chromosome Location	chr11:85159102-85159103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84911038..84912682-chr11:85158292..85160996,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501595	0.85[CEU][hapmap]
rs11234359	0.89[CHB][hapmap]
rs1213236	0.87[ASN][1000 genomes]
rs12419394	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs1354397	0.89[CHB][hapmap]
rs1647941	0.87[ASN][1000 genomes]
rs166977	0.87[ASN][1000 genomes]
rs17208492	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs17208519	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs17810659	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs1892872	0.84[CHB][hapmap]
rs190813	0.82[ASN][1000 genomes]
rs2113920	0.92[ASN][1000 genomes]
rs2175189	0.80[EUR][1000 genomes]
rs2433016	0.86[ASN][1000 genomes]
rs286497	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286499	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs286513	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs286515	0.89[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4943918	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4943925	1.00[CEU][hapmap]
rs4944516	0.91[ASN][1000 genomes]
rs4944522	0.80[EUR][1000 genomes]
rs4944529	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs4944531	0.84[CHB][hapmap]
rs496814	0.82[CEU][hapmap]
rs516620	0.82[CEU][hapmap]
rs531331	0.82[CEU][hapmap]
rs550981	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7104879	0.91[ASN][1000 genomes]
rs7110363	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7116340	0.89[ASN][1000 genomes]
rs7122822	0.90[ASN][1000 genomes]
rs7130198	0.90[ASN][1000 genomes]
rs7943586	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs7948778	0.85[CHB][hapmap]
rs881121	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs947861	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs947863	0.85[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85155800-85160800	Weak transcription	Psoas Muscle	Psoas

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