Variant report

Variant	rs12419394
Chromosome Location	chr11:84967323-84967324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84965218..84967879-chr11:84970390..84972162,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10898380	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10898382	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11234316	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1517311	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1682383	0.86[ASN][1000 genomes]
rs17810088	1.00[CEU][hapmap]
rs1826612	0.82[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1914373	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1914376	0.90[ASN][1000 genomes]
rs2138748	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs35167573	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs473968	0.86[ASN][1000 genomes]
rs474992	0.85[ASN][1000 genomes]
rs475164	0.86[ASN][1000 genomes]
rs476781	0.89[ASN][1000 genomes]
rs488668	0.82[ASN][1000 genomes]
rs4944513	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs495905	0.86[ASN][1000 genomes]
rs496814	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs497607	0.81[ASN][1000 genomes]
rs500307	0.82[ASN][1000 genomes]
rs508177	0.83[ASN][1000 genomes]
rs512775	0.86[ASN][1000 genomes]
rs512910	0.86[ASN][1000 genomes]
rs514639	0.81[ASN][1000 genomes]
rs516080	0.82[ASN][1000 genomes]
rs516620	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs519429	0.86[ASN][1000 genomes]
rs527928	0.81[ASN][1000 genomes]
rs530293	0.89[ASN][1000 genomes]
rs531331	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs534604	0.86[ASN][1000 genomes]
rs539551	0.89[ASN][1000 genomes]
rs550981	0.83[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs603170	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs680675	0.81[ASN][1000 genomes]
rs7106588	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs7111281	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs73525446	0.80[ASN][1000 genomes]
rs789599	0.89[ASN][1000 genomes]
rs938728	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs951729	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84963800-84972800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:84964800-84971800	Weak transcription	HSMMtube	muscle
3	chr11:84965200-84974400	Weak transcription	Left Ventricle	heart
4	chr11:84965200-84977000	Weak transcription	Aorta	Aorta
5	chr11:84966000-84968400	Weak transcription	Right Ventricle	heart

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