Variant report

Variant	rs789599
Chromosome Location	chr11:84985375-84985376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12419394	0.89[ASN][1000 genomes]
rs1682383	0.96[ASN][1000 genomes]
rs17810088	0.85[EUR][1000 genomes]
rs1793210	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1826612	0.86[ASN][1000 genomes]
rs1914376	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286044	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2930575	0.81[ASN][1000 genomes]
rs35167573	0.86[ASN][1000 genomes]
rs473968	0.96[ASN][1000 genomes]
rs474992	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs475164	0.96[ASN][1000 genomes]
rs476781	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488668	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4944513	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs495905	0.96[ASN][1000 genomes]
rs496814	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs497607	0.90[ASN][1000 genomes]
rs500307	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs508177	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs512775	0.96[ASN][1000 genomes]
rs512910	0.96[ASN][1000 genomes]
rs514639	0.90[ASN][1000 genomes]
rs516080	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs516620	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519429	0.96[ASN][1000 genomes]
rs526990	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs527928	0.90[ASN][1000 genomes]
rs530293	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531331	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs534604	0.96[ASN][1000 genomes]
rs539551	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs550981	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs680675	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73525446	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs938728	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951729	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84967800-85019400	Weak transcription	Ovary	ovary
2	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links