Variant report

Variant	rs1793210
Chromosome Location	chr11:85057831-85057832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10898380	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap]
rs10898382	0.89[CHB][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs11234316	0.82[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap]
rs11234359	0.89[CHB][hapmap];0.82[CHD][hapmap]
rs1213236	0.84[ASN][1000 genomes]
rs12419394	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1354397	0.89[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap]
rs1517311	0.82[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs1647941	0.84[ASN][1000 genomes]
rs166977	0.84[ASN][1000 genomes]
rs1682383	0.86[ASN][1000 genomes]
rs1826612	0.82[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs190813	0.80[ASN][1000 genomes]
rs1914373	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1914376	0.82[AMR][1000 genomes]
rs2113920	0.82[ASN][1000 genomes]
rs2138748	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2203702	0.81[MEX][hapmap]
rs2433016	0.84[ASN][1000 genomes]
rs286044	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs286499	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs286513	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs286515	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2930575	0.94[ASN][1000 genomes]
rs473968	0.86[ASN][1000 genomes]
rs474992	0.83[AMR][1000 genomes]
rs475164	0.86[ASN][1000 genomes]
rs476781	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs488668	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943918	0.89[CHB][hapmap];0.80[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4944513	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4944516	0.82[ASN][1000 genomes]
rs495905	0.86[ASN][1000 genomes]
rs496814	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs497607	0.90[ASN][1000 genomes]
rs500307	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs508177	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs512775	0.86[ASN][1000 genomes]
rs512910	0.86[ASN][1000 genomes]
rs514639	0.92[ASN][1000 genomes]
rs516080	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs516620	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs519429	0.86[ASN][1000 genomes]
rs526990	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs527928	0.90[ASN][1000 genomes]
rs530293	0.84[ASN][1000 genomes]
rs531331	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs534604	0.86[ASN][1000 genomes]
rs539551	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs550981	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs603170	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7104879	0.82[ASN][1000 genomes]
rs7106588	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7110363	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7111281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7122822	0.86[ASN][1000 genomes]
rs7130198	0.83[ASN][1000 genomes]
rs789599	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs938728	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap]
rs951729	0.82[CEU][hapmap];0.84[CHB][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	esv3471441	chr11:85055781-85061154	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3471452	chr11:85055781-85061154	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85049600-85059400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:85056200-85060200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:85056400-85059000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:85056600-85060400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:85057400-85058600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:85057400-85059000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:85057400-85060000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:85057600-85060200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:85057600-85060600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:85057800-85059000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:85057800-85060200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:85057800-85060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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