Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10898380	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap]
rs10898382	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap]
rs12419394	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1517311	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs17810088	0.82[CEU][hapmap]
rs1826612	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1914373	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2138748	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs35167573	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4944513	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs496814	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs516620	0.82[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs531331	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap]
rs550981	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs603170	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs680675	0.91[ASN][1000 genomes]
rs7106588	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7111281	0.82[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs73525446	0.86[ASN][1000 genomes]
rs938728	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs951729	0.89[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84866000-84881200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:84878200-84878800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:84878200-84879000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:84878200-84879000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:84878200-84879200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:84878200-84879200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:84878200-84879200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:84878200-84879400	Enhancers	NHEK	skin
9	chr11:84878400-84878600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:84878400-84878600	Enhancers	HSMMtube	muscle
11	chr11:84878400-84878800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:84878400-84878800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:84878400-84879000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:84878400-84879000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr11:84878400-84879200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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