Variant report

Variant	rs1826612
Chromosome Location	chr11:84872234-84872235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10898380	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs10898382	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs11234316	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12419394	0.82[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1517311	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1682383	0.84[ASN][1000 genomes]
rs17810088	0.82[CEU][hapmap];0.94[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1914373	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1914376	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2138748	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs35167573	0.80[ASN][1000 genomes]
rs473968	0.84[ASN][1000 genomes]
rs474992	0.82[ASN][1000 genomes]
rs475164	0.84[ASN][1000 genomes]
rs476781	0.87[ASN][1000 genomes]
rs4944513	0.82[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.87[ASN][1000 genomes]
rs495905	0.84[ASN][1000 genomes]
rs496814	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs512775	0.84[ASN][1000 genomes]
rs512910	0.84[ASN][1000 genomes]
rs516620	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs519429	0.84[ASN][1000 genomes]
rs530293	0.87[ASN][1000 genomes]
rs531331	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs534604	0.84[ASN][1000 genomes]
rs539551	0.86[ASN][1000 genomes]
rs550981	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603170	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs660451	0.81[YRI][hapmap]
rs680675	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7106588	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs7111281	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs73525446	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs789599	0.86[ASN][1000 genomes]
rs938728	0.82[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs951729	0.88[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84866000-84881200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:84866400-84878400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:84866400-84878400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:84871600-84873200	ZNF genes & repeats	Aorta	Aorta

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