Variant report

Variant	rs2138748
Chromosome Location	chr11:84940677-84940678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10792810	0.81[CHB][hapmap]
rs10898380	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10898382	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs11234316	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12419394	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1517311	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1682383	0.91[ASN][1000 genomes]
rs17810088	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs1793210	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1826612	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1914373	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1914376	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2000962	0.81[CHB][hapmap]
rs2203702	0.81[CHB][hapmap]
rs286044	0.81[ASN][1000 genomes]
rs35167573	0.88[ASN][1000 genomes]
rs473968	0.91[ASN][1000 genomes]
rs474992	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs475164	0.91[ASN][1000 genomes]
rs476781	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs488668	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4944512	0.81[CHB][hapmap]
rs4944513	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs495905	0.91[ASN][1000 genomes]
rs496814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs497607	0.86[ASN][1000 genomes]
rs500307	0.86[ASN][1000 genomes]
rs508177	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs512775	0.91[ASN][1000 genomes]
rs512910	0.91[ASN][1000 genomes]
rs514639	0.85[ASN][1000 genomes]
rs516080	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs516620	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519429	0.91[ASN][1000 genomes]
rs526990	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs527928	0.86[ASN][1000 genomes]
rs530293	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs531331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs534604	0.91[ASN][1000 genomes]
rs539551	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs550981	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs603170	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs680675	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7106588	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7111281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73525446	0.88[ASN][1000 genomes]
rs789599	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs938727	0.81[CHB][hapmap]
rs938728	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs951729	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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