Variant report

Variant	rs10898382
Chromosome Location	chr11:84928974-84928975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10898380	0.94[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs11234316	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12419394	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1517311	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs17810088	0.83[CHB][hapmap];0.89[EUR][1000 genomes]
rs1826612	0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1914373	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1914376	0.84[ASN][1000 genomes]
rs2138748	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs35167573	0.90[ASN][1000 genomes]
rs474992	0.82[EUR][1000 genomes]
rs476781	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944513	0.84[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs496814	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs516620	0.89[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs530293	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs531331	0.94[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs539551	0.82[ASN][1000 genomes]
rs550981	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs603170	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs680675	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106588	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7111281	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs73525446	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs789599	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs938728	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs951729	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898382	CCDC83	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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