Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:84845916-84846108	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10898380	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10898382	0.83[CHB][hapmap]
rs11234316	0.82[CEU][hapmap]
rs12419394	1.00[CEU][hapmap]
rs1517311	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs1826612	0.82[CEU][hapmap];0.94[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1914373	0.84[CHB][hapmap]
rs2138748	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs476781	0.83[EUR][1000 genomes]
rs4944513	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs496814	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs516620	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs530293	0.83[EUR][1000 genomes]
rs531331	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs550981	0.83[CHB][hapmap]
rs603170	0.85[CHB][hapmap];0.81[YRI][hapmap]
rs680675	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7106588	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7111281	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs73525446	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs789599	0.85[EUR][1000 genomes]
rs938728	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs951729	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84844400-84848400	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:84844600-84846600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:84844800-84848600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:84845000-84847200	Weak transcription	Fetal Brain Male	brain

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