Variant report

Variant	rs951729
Chromosome Location	chr11:84935074-84935075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10898380	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs10898382	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap]
rs11234316	0.89[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs12419394	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1517311	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs1682383	0.87[ASN][1000 genomes]
rs17810088	0.82[CEU][hapmap]
rs1826612	0.88[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1914373	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs1914376	0.86[ASN][1000 genomes]
rs2138748	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs35167573	0.92[ASN][1000 genomes]
rs473968	0.87[ASN][1000 genomes]
rs474992	0.81[ASN][1000 genomes]
rs475164	0.87[ASN][1000 genomes]
rs476781	0.86[ASN][1000 genomes]
rs4944513	0.82[CEU][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs495905	0.87[ASN][1000 genomes]
rs496814	0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs497607	0.82[ASN][1000 genomes]
rs512775	0.87[ASN][1000 genomes]
rs512910	0.87[ASN][1000 genomes]
rs514639	0.81[ASN][1000 genomes]
rs516620	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs519429	0.87[ASN][1000 genomes]
rs527928	0.82[ASN][1000 genomes]
rs530293	0.86[ASN][1000 genomes]
rs531331	0.94[ASW][hapmap];0.82[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs534604	0.87[ASN][1000 genomes]
rs539551	0.85[ASN][1000 genomes]
rs550981	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs603170	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs680675	0.81[ASN][1000 genomes]
rs7106588	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap]
rs7111281	0.82[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap]
rs789599	0.85[ASN][1000 genomes]
rs938728	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs951729	TMEM126B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84934200-84935200	Weak transcription	Fetal Intestine Large	intestine

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