Variant report

Variant	rs35167573
Chromosome Location	chr11:84964811-84964812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11234316	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12419394	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1682383	0.83[ASN][1000 genomes]
rs1826612	0.80[ASN][1000 genomes]
rs1914376	0.94[ASN][1000 genomes]
rs473968	0.83[ASN][1000 genomes]
rs474992	0.83[ASN][1000 genomes]
rs475164	0.83[ASN][1000 genomes]
rs476781	0.87[ASN][1000 genomes]
rs4944513	0.93[ASN][1000 genomes]
rs495905	0.83[ASN][1000 genomes]
rs496814	0.86[ASN][1000 genomes]
rs512775	0.83[ASN][1000 genomes]
rs512910	0.83[ASN][1000 genomes]
rs516620	0.90[ASN][1000 genomes]
rs519429	0.83[ASN][1000 genomes]
rs530293	0.87[ASN][1000 genomes]
rs531331	0.86[ASN][1000 genomes]
rs534604	0.83[ASN][1000 genomes]
rs539551	0.85[ASN][1000 genomes]
rs550981	0.85[ASN][1000 genomes]
rs789599	0.86[ASN][1000 genomes]
rs938728	0.96[ASN][1000 genomes]
rs951729	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84963800-84972800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:84964400-84965000	Enhancers	Psoas Muscle	Psoas
3	chr11:84964400-84965200	ZNF genes & repeats	Aorta	Aorta
4	chr11:84964400-84965200	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr11:84964400-84965200	ZNF genes & repeats	Left Ventricle	heart
6	chr11:84964600-84965200	ZNF genes & repeats	Ovary	ovary
7	chr11:84964800-84971800	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links