Variant report

Variant	rs508177
Chromosome Location	chr11:85047318-85047319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CREBZF-3	chr11:85047119-85047616	NONHSAT023432

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12419394	0.83[ASN][1000 genomes]
rs1682383	0.91[ASN][1000 genomes]
rs1793210	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1914376	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs286044	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2930575	0.88[ASN][1000 genomes]
rs473968	0.91[ASN][1000 genomes]
rs474992	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs475164	0.91[ASN][1000 genomes]
rs476781	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs488668	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944513	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs495905	0.91[ASN][1000 genomes]
rs496814	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs497607	0.95[ASN][1000 genomes]
rs500307	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs512775	0.91[ASN][1000 genomes]
rs512910	0.91[ASN][1000 genomes]
rs514639	0.98[ASN][1000 genomes]
rs516080	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs516620	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs519429	0.91[ASN][1000 genomes]
rs526990	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs527928	0.95[ASN][1000 genomes]
rs530293	0.90[ASN][1000 genomes]
rs531331	0.93[ASN][1000 genomes]
rs534604	0.91[ASN][1000 genomes]
rs539551	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs550981	0.94[ASN][1000 genomes]
rs7122822	0.81[ASN][1000 genomes]
rs789599	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs938728	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85047000-85047800	ZNF genes & repeats	Aorta	Aorta

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