Variant report
Variant | rs500307 |
---|---|
Chromosome Location | chr11:85031982-85031983 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:85027519..85030292-chr11:85031514..85033844,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12419394 | 0.82[ASN][1000 genomes] |
rs1682383 | 0.90[ASN][1000 genomes] |
rs1793210 | 0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs1914376 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs286044 | 0.91[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2930575 | 0.88[ASN][1000 genomes] |
rs473968 | 0.90[ASN][1000 genomes] |
rs474992 | 0.84[ASN][1000 genomes] |
rs475164 | 0.90[ASN][1000 genomes] |
rs476781 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs488668 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4944513 | 0.85[ASN][1000 genomes] |
rs495905 | 0.90[ASN][1000 genomes] |
rs496814 | 0.92[ASN][1000 genomes] |
rs497607 | 0.96[ASN][1000 genomes] |
rs508177 | 0.87[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs512775 | 0.90[ASN][1000 genomes] |
rs512910 | 0.90[ASN][1000 genomes] |
rs514639 | 0.97[ASN][1000 genomes] |
rs516080 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs516620 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs519429 | 0.90[ASN][1000 genomes] |
rs526990 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs527928 | 0.96[ASN][1000 genomes] |
rs530293 | 0.89[ASN][1000 genomes] |
rs531331 | 0.92[ASN][1000 genomes] |
rs534604 | 0.90[ASN][1000 genomes] |
rs539551 | 0.93[ASN][1000 genomes] |
rs550981 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7122822 | 0.80[ASN][1000 genomes] |
rs789599 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs938728 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
2 | nsv898043 | chr11:84895033-85148689 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv898044 | chr11:84895033-85220773 | ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | nsv1051155 | chr11:85006564-85721261 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
5 | nsv541110 | chr11:85006564-85721261 | Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:85031600-85032200 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |