Variant report

Variant	rs660451
Chromosome Location	chr11:84830452-84830453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501585	0.85[CEU][hapmap]
rs10501590	0.83[CHB][hapmap]
rs10792810	0.89[CHB][hapmap]
rs11600088	0.92[CEU][hapmap]
rs11605620	0.83[GIH][hapmap];0.85[JPT][hapmap]
rs1400630	0.83[CHB][hapmap]
rs1517308	0.83[CHB][hapmap]
rs1517310	0.83[CHB][hapmap]
rs1783749	0.92[CEU][hapmap];0.94[GIH][hapmap];0.83[EUR][1000 genomes]
rs180953	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs180954	0.92[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.89[EUR][1000 genomes]
rs1826612	0.81[YRI][hapmap]
rs2000962	0.88[CHB][hapmap]
rs2203702	0.89[CHB][hapmap]
rs2449987	0.83[CHB][hapmap]
rs349059	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs349061	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs349064	0.92[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs349067	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs349074	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs349075	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs349077	0.85[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs349079	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs349081	0.83[ASW][hapmap];0.82[LWK][hapmap]
rs471786	0.83[CHB][hapmap]
rs472375	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs472406	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs472630	0.83[CHB][hapmap]
rs4944512	0.89[CHB][hapmap]
rs509179	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs573963	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs576449	0.93[CEU][hapmap];0.80[JPT][hapmap]
rs580188	0.81[CHB][hapmap]
rs582652	0.85[CEU][hapmap]
rs596423	0.85[CEU][hapmap];0.83[GIH][hapmap]
rs601857	0.83[CHB][hapmap]
rs612389	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs623403	0.88[EUR][1000 genomes]
rs624493	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs651536	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs659414	0.93[CEU][hapmap]
rs660860	0.86[CEU][hapmap];0.90[JPT][hapmap]
rs664417	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs678796	0.86[CEU][hapmap]
rs7931733	0.85[JPT][hapmap]
rs7935720	0.83[CHB][hapmap]
rs938727	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84829600-84831000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:84829600-84834800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:84829600-84843600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:84829800-84831000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:84829800-84831000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:84829800-84831200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:84830400-84838400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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