Variant report

Variant	rs678796
Chromosome Location	chr11:84706932-84706933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501585	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11600088	0.87[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap]
rs11605620	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap]
rs11607636	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs11607740	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs17207058	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs1783749	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs180954	0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs2508322	0.82[JPT][hapmap]
rs349059	0.80[CHB][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes]
rs349061	0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes]
rs349064	0.81[CHB][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes]
rs349067	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs349068	0.85[JPT][hapmap]
rs349077	0.86[CEU][hapmap]
rs349079	0.86[CEU][hapmap]
rs472375	0.86[CEU][hapmap];0.80[CHB][hapmap];0.82[YRI][hapmap]
rs472406	0.86[CEU][hapmap];0.80[CHB][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs483220	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs494517	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs509179	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs550970	0.81[JPT][hapmap]
rs570423	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs573767	0.85[JPT][hapmap]
rs573963	0.86[CEU][hapmap];0.80[CHB][hapmap]
rs576449	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs582652	0.86[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs596423	0.86[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs597604	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs612389	0.86[CEU][hapmap];0.80[CHB][hapmap]
rs613972	0.86[JPT][hapmap]
rs623403	0.80[AMR][1000 genomes]
rs624493	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap]
rs637930	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs651536	0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs653885	0.86[JPT][hapmap]
rs6592229	0.82[JPT][hapmap]
rs659414	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs660451	0.86[CEU][hapmap]
rs660860	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap]
rs664417	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs7111336	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84706600-84707800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links