Variant report

Variant	rs349079
Chromosome Location	chr11:84810131-84810132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84809503..84811967-chr11:84814385..84818155,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501585	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs10792795	0.83[JPT][hapmap]
rs11600088	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs11605620	0.82[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs11607740	0.82[CHB][hapmap]
rs17207058	0.81[YRI][hapmap]
rs1783749	0.92[CEU][hapmap];0.94[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs180953	0.82[EUR][1000 genomes]
rs180954	0.92[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs349059	0.92[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs349061	0.92[CEU][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs349064	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs349067	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs349068	0.83[CHD][hapmap]
rs349074	0.84[EUR][1000 genomes]
rs349075	0.82[EUR][1000 genomes]
rs349077	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes]
rs349078	0.82[CHB][hapmap]
rs349081	0.86[MEX][hapmap];0.80[AMR][1000 genomes]
rs349089	0.82[JPT][hapmap]
rs3907015	0.83[JPT][hapmap]
rs472375	0.86[CEU][hapmap];0.95[JPT][hapmap]
rs472406	0.92[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs494517	0.84[AMR][1000 genomes]
rs509179	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs570423	0.84[AMR][1000 genomes]
rs573963	0.86[CEU][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs576449	0.93[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs582652	0.85[CEU][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.81[YRI][hapmap]
rs596423	0.85[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs612389	0.86[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs616320	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs623403	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs624493	0.92[ASW][hapmap];0.86[CEU][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs630015	0.82[JPT][hapmap]
rs637930	0.84[AMR][1000 genomes]
rs651536	0.92[CEU][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs659414	0.93[CEU][hapmap]
rs660451	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs660860	0.86[CEU][hapmap];0.95[JPT][hapmap]
rs664417	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs678796	0.86[CEU][hapmap]
rs7131501	0.83[CHB][hapmap]
rs7931733	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84809800-84810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:84809800-84810400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:84810000-84810400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:84810000-84810400	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:84810000-84810400	Enhancers	Left Ventricle	heart
6	chr11:84810000-84812400	Enhancers	Fetal Heart	heart

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