Variant report

Variant	rs11607740
Chromosome Location	chr11:84665769-84665770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84659697..84661496-chr11:84663828..84666456,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501585	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10898338	0.81[YRI][hapmap]
rs10898339	0.83[YRI][hapmap]
rs11234253	0.81[YRI][hapmap]
rs11600088	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11605620	0.86[CHB][hapmap]
rs11607636	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17207058	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17741917	0.82[LWK][hapmap];0.85[YRI][hapmap]
rs1783749	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs180954	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs349059	0.86[CHB][hapmap]
rs349061	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs349063	0.85[JPT][hapmap]
rs349064	0.80[CHB][hapmap]
rs349067	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs349079	0.82[CHB][hapmap]
rs3851172	0.81[YRI][hapmap]
rs3911273	0.81[YRI][hapmap]
rs472375	0.80[CHB][hapmap]
rs472406	0.80[CHB][hapmap]
rs483220	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs4943908	0.81[YRI][hapmap]
rs506422	0.82[CHB][hapmap]
rs509179	0.80[CHB][hapmap]
rs573963	0.80[CHB][hapmap]
rs576449	0.80[CHB][hapmap]
rs582652	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs596423	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs612389	0.80[CHB][hapmap]
rs613972	0.81[JPT][hapmap]
rs624493	0.80[CHB][hapmap]
rs635860	0.82[CHB][hapmap]
rs651536	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs659414	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs660860	0.80[CHB][hapmap]
rs664417	0.80[CHB][hapmap]
rs678796	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7943194	0.84[LWK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11607740	BCR	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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