Variant report

Variant	rs349063
Chromosome Location	chr11:84788454-84788455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84787875..84791541-chr11:84796129..84798361,4	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10792795	0.93[YRI][hapmap]
rs10898341	0.87[YRI][hapmap]
rs11234262	0.90[YRI][hapmap]
rs11234263	0.90[YRI][hapmap]
rs11234269	0.84[ASN][1000 genomes]
rs11600088	0.85[JPT][hapmap]
rs11607636	0.89[JPT][hapmap]
rs11607740	0.85[JPT][hapmap]
rs1532312	0.82[YRI][hapmap]
rs17207058	0.85[JPT][hapmap]
rs1783749	0.85[JPT][hapmap]
rs180954	0.84[JPT][hapmap]
rs2444253	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508322	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs349060	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs349061	0.85[JPT][hapmap]
rs349062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs349068	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs349069	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap]
rs349078	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs349080	0.84[CHB][hapmap];0.87[YRI][hapmap]
rs349082	0.89[CHB][hapmap]
rs349083	0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs349084	0.86[YRI][hapmap]
rs349086	0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs349089	0.84[CHB][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes]
rs3851174	0.87[YRI][hapmap]
rs3862780	0.84[ASN][1000 genomes]
rs3907015	0.93[YRI][hapmap]
rs4121473	0.80[JPT][hapmap];0.84[YRI][hapmap]
rs4271408	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap]
rs4944509	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs506422	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs550970	0.96[CEU][hapmap];0.89[YRI][hapmap]
rs565044	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs573767	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs582399	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs582652	0.85[JPT][hapmap]
rs596423	0.85[JPT][hapmap]
rs613972	0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs616320	0.89[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs619848	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs630015	0.84[CHB][hapmap]
rs633703	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs634050	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs635860	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs651536	0.85[JPT][hapmap]
rs652852	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs653885	0.96[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs6592223	0.84[YRI][hapmap]
rs6592229	0.93[YRI][hapmap]
rs7105774	0.85[YRI][hapmap]
rs7111336	0.90[YRI][hapmap]
rs7112064	0.93[YRI][hapmap]
rs7125600	0.86[YRI][hapmap]
rs7127826	0.80[YRI][hapmap]
rs7131501	0.83[CHB][hapmap]
rs7482922	0.86[YRI][hapmap]
rs7929647	0.90[YRI][hapmap]
rs7949547	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84787000-84789000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:84787200-84788600	Enhancers	NHDF-Ad	bronchial
3	chr11:84787200-84789400	Enhancers	NHEK	skin
4	chr11:84787400-84788600	Enhancers	HMEC	breast
5	chr11:84787600-84788600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:84787600-84788600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:84787600-84788600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr11:84788200-84789200	Weak transcription	Fetal Brain Male	brain
9	chr11:84788400-84792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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