Variant report

Variant	rs4271408
Chromosome Location	chr11:84769363-84769364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792795	0.84[CHB][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap]
rs11234262	0.84[CHB][hapmap];0.83[YRI][hapmap]
rs11234263	0.84[CHB][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs2155039	0.81[JPT][hapmap]
rs2444253	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2508322	0.91[CEU][hapmap];0.82[YRI][hapmap]
rs349059	0.85[JPT][hapmap]
rs349060	1.00[ASN][1000 genomes]
rs349062	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs349063	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs349068	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs349069	0.84[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs349078	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs349080	0.89[CHB][hapmap];0.83[YRI][hapmap]
rs349082	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs349084	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs349086	0.82[CHB][hapmap]
rs349089	0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs3851174	0.83[CHB][hapmap]
rs3907015	0.85[LWK][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap]
rs3933734	0.81[YRI][hapmap]
rs4121472	0.82[YRI][hapmap]
rs4944509	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506422	0.91[CEU][hapmap];0.88[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs550970	0.96[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs565044	0.86[CEU][hapmap];0.80[AMR][1000 genomes]
rs573767	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs582399	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs613972	0.82[CHB][hapmap];0.96[YRI][hapmap]
rs616320	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs619848	0.96[YRI][hapmap]
rs630015	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs633703	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs634050	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs635860	0.89[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs652852	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs653885	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap]
rs6592229	0.86[YRI][hapmap]
rs7105774	0.88[ASW][hapmap];0.84[CHB][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap]
rs7111336	0.82[YRI][hapmap]
rs7112064	0.86[YRI][hapmap]
rs7127826	0.86[YRI][hapmap]
rs7131501	0.83[CHB][hapmap]
rs7482922	0.87[CHB][hapmap]
rs7925898	0.80[YRI][hapmap]
rs7929647	0.84[CHB][hapmap];0.83[YRI][hapmap]
rs7931733	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7949547	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	esv3427680	chr11:84766704-84770602	Active TSS	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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