Variant report

Variant	rs635860
Chromosome Location	chr11:84755097-84755098
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84750639..84752620-chr11:84754807..84756706,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10792795	0.85[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap]
rs10792796	0.85[ASN][1000 genomes]
rs10898341	0.85[YRI][hapmap]
rs11234262	0.89[YRI][hapmap]
rs11234263	0.90[YRI][hapmap]
rs11234269	0.85[AFR][1000 genomes]
rs11605620	0.81[CHD][hapmap]
rs11607740	0.82[CHB][hapmap]
rs1532312	0.82[YRI][hapmap]
rs2444253	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2508322	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs349060	0.81[AFR][1000 genomes]
rs349062	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs349063	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs349068	0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs349069	0.84[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs349078	0.82[CHB][hapmap]
rs349080	0.90[YRI][hapmap]
rs349084	0.86[YRI][hapmap]
rs349086	0.82[YRI][hapmap]
rs349088	0.92[CHD][hapmap]
rs349089	0.89[YRI][hapmap]
rs3844142	0.91[ASN][1000 genomes]
rs3851174	0.83[CHB][hapmap];0.86[YRI][hapmap]
rs3862780	0.83[AFR][1000 genomes]
rs3907015	0.83[LWK][hapmap];0.82[MKK][hapmap];0.93[YRI][hapmap]
rs4121473	0.83[YRI][hapmap]
rs4271408	0.89[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs472375	0.80[CHD][hapmap]
rs472406	0.82[CHD][hapmap]
rs483220	0.84[JPT][hapmap]
rs4944509	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs506422	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs550970	0.88[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs565044	0.91[CEU][hapmap]
rs573767	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs582399	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs613972	0.82[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs616320	0.83[CHB][hapmap];0.89[YRI][hapmap]
rs619848	0.89[YRI][hapmap]
rs633703	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs634050	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs652852	0.84[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs653885	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6592223	0.83[YRI][hapmap]
rs6592229	0.83[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs668816	0.88[CHD][hapmap]
rs7105774	0.88[ASW][hapmap];0.85[YRI][hapmap]
rs7111336	0.83[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs7112064	0.93[YRI][hapmap]
rs7125600	0.85[YRI][hapmap]
rs7131501	0.83[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs7131533	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7482922	0.81[CHB][hapmap];0.85[YRI][hapmap]
rs7929647	0.90[YRI][hapmap]
rs7931733	0.88[CHB][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84751600-84755600	Enhancers	Fetal Intestine Large	intestine
2	chr11:84754800-84755400	Enhancers	Rectal Mucosa Donor 31	rectum

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