Variant report

Variant	rs550970
Chromosome Location	chr11:84745511-84745512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10792795	0.84[CHB][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs10792796	0.93[ASN][1000 genomes]
rs10898338	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10898339	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10898341	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs11234253	0.89[CHB][hapmap]
rs11234262	0.84[CHB][hapmap];0.93[YRI][hapmap]
rs11234263	0.84[CHB][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap]
rs11234269	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1532312	0.82[YRI][hapmap]
rs17741917	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs2374578	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs2444253	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2508322	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs349057	0.82[YRI][hapmap]
rs349062	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs349063	0.96[CEU][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs349067	0.81[JPT][hapmap]
rs349068	0.87[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs349069	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs349080	0.86[YRI][hapmap]
rs349083	0.81[TSI][hapmap]
rs349084	0.81[TSI][hapmap];0.82[YRI][hapmap]
rs3844142	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3851172	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs3851173	0.89[CHB][hapmap]
rs3851174	0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs3862780	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3862781	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3907015	0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs3911270	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs3911273	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs3933734	0.89[CHB][hapmap];0.89[YRI][hapmap]
rs4121472	0.89[CHB][hapmap];0.85[YRI][hapmap]
rs4121473	0.89[CHB][hapmap];0.87[YRI][hapmap]
rs4271408	0.96[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs483220	0.85[JPT][hapmap]
rs4943908	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4944509	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs506422	0.95[CEU][hapmap];0.88[CHB][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs565044	0.91[CEU][hapmap]
rs573767	0.81[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs582399	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs613972	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs633703	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs634050	0.88[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs635860	0.88[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652852	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs653885	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap]
rs6592218	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6592219	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6592223	0.86[YRI][hapmap]
rs6592229	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs659414	0.81[JPT][hapmap]
rs678796	0.81[JPT][hapmap]
rs7105774	0.84[CHB][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap]
rs7111336	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7112064	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.84[ASN][1000 genomes]
rs7125600	0.84[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs7127826	0.89[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs7131533	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7482922	0.93[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs7925898	0.89[CHB][hapmap];0.84[YRI][hapmap]
rs7929647	0.84[CHB][hapmap];0.93[YRI][hapmap]
rs7933636	0.82[YRI][hapmap]
rs7943194	0.89[CHB][hapmap]
rs7949547	0.89[CHB][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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